J Gen Virol 2002, 83:1523–1533 PubMed 32 Kazaks A, Voronkova T,

J Gen Virol 2002, 83:1523–1533.PubMed 32. Kazaks A, Voronkova T, Rumnieks J, Dishlers A, Tars K: Genome structure of Caulobacter check details phage phiCb5. J Virol 2011, 85:4628–4631.PubMedCrossRef 33. Krogh A, Larsson B, von Heijne G, Sonnhammer EL: Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001, 305:567–580.PubMedCrossRef 34. Hofacker IL: Vienna RNA OICR-9429 cell line secondary structure server. Nucl Acids Res 2003, 31:3429–3431.PubMedCrossRef 35. de Smit MH, van Duin J: Secondary structure of the ribosome binding site determines translational efficiency: a quantitative analysis. Proc Natl Acad Sci USA 1990, 87:7668–7672.PubMedCrossRef

36. Shiba T, Suzuki Y: Localization of A protein in the RNA-A AZD2281 mouse protein complex of RNA phage MS2. Biochim Biophys Acta 1981, 654:249–255.PubMedCrossRef 37. Bernardi A, Spahr PF: Nucleotide sequence at the binding site for coat protein on RNA of bacteriophage R17. Proc Natl Acad Sci USA 1972, 69:3033–3037.PubMedCrossRef 38. Meyer F,

Weber H, Weissmann C: Interactions of Qβ replicase with Qβ RNA. J Mol Biol 1981, 153:631–660.PubMedCrossRef 39. Basnak G, Morton VL, Rolfsson O, Stonehouse NJ, Ashcroft AE, Stockley PG: Viral genomic single-stranded RNA directs the pathway toward a T=3 capsid. J Mol Biol 2010, 395:924–936.PubMedCrossRef 40. Beekwilder J, Nieuwenhuizen R, Poot R, van Duin J: Secondary structure model for the first three domains of Qβ RNA. Control of A-protein synthesis. J Mol Biol 1996, 256:8–19.PubMedCrossRef 41. Beckett D, Wu HN, Uhlenbeck OC: Roles of operator and nonoperator RNA sequences in bacteriophage R17 capsid assembly. J Mol Biol 1988, 204:939–947.PubMedCrossRef 42. Carey J, Lowary P, Uhlenbeck OC: Interaction of R17 coat protein with synthetic variants of its ribonucleic acid binding site. Biochemistry 1983, 22:4723–4730.PubMedCrossRef 43. Gott JM, Wilhelm

LJ, Uhlenbeck OC: RNA binding properties of the coat protein from bacteriophage GA. Nucl Acids Res. 1991, 19:6499–6503.PubMedCrossRef 44. Persson M, Tars K, Liljas L: PRR1 coat protein binding to its RNA translational operator. Acta Crystallogr D Biol MG-132 chemical structure Crystallogr in press 45. Beekwilder MJ, Nieuwenhuizen R, van Duin J: Secondary structure model for the last two domains of single-stranded RNA phage Qβ. J Mol Biol 1995, 247:903–917.PubMedCrossRef 46. Olsthoorn RC, Garde G, Dayhuff T, Atkins JF, Van Duin J: Nucleotide sequence of a single-stranded RNA phage from Pseudomonas aeruginosa : kinship to coliphages and conservation of regulatory RNA structures. Virology 1995, 206:611–625.PubMedCrossRef 47. Klovins J, van Duin J: A long-range pseudoknot in Qβ RNA is essential for replication. J Mol Biol 1999, 294:875–884.PubMedCrossRef 48. Koonin EV, Dolja VV: Evolution and taxonomy of positive-strand RNA viruses: implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 1993, 28:375–430.

Comments are closed.